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Leibniz FLI
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2024-05-03 08:00:30
Horizontal gene transfer (HGT) analysis according to Sigi-HMM
 
Sigi-HMM
is a tool for the prediction of genomic islands in prokaryotic genomes using hidden markov models.
Select genomic element:
Acetobacter aceti, pAC5
Acetobacter pasteurianus, pAP12875
Achromobacter denitrificans, EST4002, pEST4011
Achromobacter xylosoxidans, A8, pA81
Acidianus ambivalens, Lei 10, pDL10
Acidithiobacillus caldus, F, pTC-F14
Acidithiobacillus ferrooxidans, ATCC33020, pTF5
Acidithiobacillus ferrooxidans, MAL4-1, pTF4.1
Acinetobacter baumannii, 19606, pMAC
Acinetobacter sp. ADP1, ADP1, chromosome
Acinetobacter sp. EB104, EB104, pAC450
Acinetobacter sp. SUN, pRAY
Actinobacillus actinomycetemcomitans, VT745, pVT745
Actinobacillus pleuropneumoniae, pKMA2425
Actinobacillus pleuropneumoniae, pMS260
Actinobacillus pleuropneumoniae, pPSAS1522
Actinobacillus pleuropneumoniae, pTYM1
Actinobacillus porcitonsillarum, pIMD50
Actinobacillus porcitonsillarum, pKMA1467
Actinobacillus porcitonsillarum, pKMA505
Actinobacillus porcitonsillarum, pKMA757
Aeromonas punctata, HGB5, pFBAOT6
Aeromonas salmonicida, pRAS3.2
Aeromonas salmonicida subsp. salmonicida, pAsal1
Aeromonas salmonicida subsp. salmonicida, pAsal2
Aeromonas salmonicida subsp. salmonicida, pAsal3
Aeromonas salmonicida subsp. salmonicida, pRAS3.1
Aeromonas salmonicida subsp. salmonicida, A449, pAsa1
Aeromonas salmonicida subsp. salmonicida, A449, pAsa2
Aeromonas salmonicida subsp. salmonicida, A449, pAsa3
Agrobacterium rhizogenes, MAFF03-01724, pRi1724
Agrobacterium tumefaciens, Ti
Agrobacterium tumefaciens str. C58 (Cereon), C58, Ti
Agrobacterium tumefaciens str. C58, C58, AT
Agrobacterium tumefaciens str. C58, C58, AT
Agrobacterium tumefaciens str. C58, C58, Ti
Agrobacterium tumefaciens str. C58, C58, chromosome
Agrobacterium tumefaciens str. C58, C58, chromosome
Agrobacterium tumefaciens str. C58, C58, chromosome
Agrobacterium tumefaciens str. C58, C58, chromosome
Agrobacterium tumefaciens, K84, pAgK84
Agrobacterium tumefaciens, MAFF301001, pTi-SAKURA
Anabaena variabilis ATCC 29413, ATCC 29413, A
Anabaena variabilis ATCC 29413, ATCC 29413, B
Anabaena variabilis ATCC 29413, ATCC 29413, C
Anabaena variabilis ATCC 29413, ATCC 29413, chromosome
Anabaena variabilis ATCC 29413, ATCC 29413, incision element
Anaeromyxobacter dehalogenans 2CP-C, 2CP-C, chromosome
Anaplasma marginale str. St. Maries, St. Maries, chromosome
Anaplasma phagocytophilum HZ, HZ, chromosome
Aquifex aeolicus VF5, VF5, chromosome
Aquifex aeolicus VF5, VF5, ece1
Arcanobacterium pyogenes, pAP2
Arcanobacterium pyogenes, BBR1, pAP1
Aster yellows phytoplasma, Japanese honewort witches broom phytoplasma, extrachromosomal DNA
Aster yellows witches-broom phytoplasma AYWB, chromosome
Avibacterium paragallinarum, HP250; TW1, p250
Azoarcus sp. EbN1, EbN1, 1
Azoarcus sp. EbN1, EbN1, 2
Azoarcus sp. EbN1, EbN1, chromosome
Bacillus anthracis, pXO2
Bacillus anthracis str. A2012, A2012, pXO1
Bacillus anthracis str. A2012, A2012, pXO2
Bacillus anthracis str. Ames Ancestor, Ames Ancestor; A2084, chromosome
Bacillus anthracis str. Ames Ancestor, Ames Ancestor; A2084, pXO1
Bacillus anthracis str. Ames Ancestor, Ames Ancestor; A2084, pXO2
Bacillus anthracis str. Ames, Ames, chromosome
Bacillus anthracis str. Sterne, Sterne, chromosome
Bacillus anthracis, Sterne, virulence plasmid PX01
Bacillus cereus ATCC 10987, ATCC 10987, chromosome
Bacillus cereus ATCC 10987, ATCC 10987, pBc10987
Bacillus cereus ATCC 14579, ATCC 14579, chromosome
Bacillus cereus ATCC 14579, ATCC 14579, pBClin15
Bacillus cereus E33L, E33L, chromosome
Bacillus cereus E33L, E33L, pE33L466
Bacillus cereus E33L, E33L, pE33L5
Bacillus cereus E33L, E33L, pE33L54
Bacillus cereus E33L, E33L, pE33L8
Bacillus cereus E33L, E33L, pE33L9
Bacillus cereus, Tim-r01, pBC-Tim
Bacillus clausii KSM-K16, KSM-K16, chromosome
Bacillus halodurans C-125, C-125, chromosome
Bacillus licheniformis ATCC 14580, DSM 13, chromosome
Bacillus licheniformis, 63.1, pBL63.1
Bacillus licheniformis, FL5, pFL5
Bacillus licheniformis, FL7, pFL7
Bacillus megaterium, QM B1551, pBM400
Bacillus methanolicus, MGA3, pBM19
Bacillus mycoides, pDx14.2
Bacillus mycoides, pSin9.7
Bacillus mycoides, DX, pBMYdx
Bacillus mycoides, sin96, pBMY1
Bacillus pumilus, ATCC 12140, pPL10
Bacillus pumilus, ATCC 7065, pPL7065
Bacillus sp. B-3, B-3, pA01
Bacillus sphaericus, pLG
Bacillus subtilis, p1414
Bacillus subtilis, pBS608
Bacillus subtilis phage PBSX, chromosome
Bacillus subtilis subsp. subtilis str. 168, 168, chromosome
Bacillus subtilis, IAM1028, pTA1015
Bacillus subtilis, IAM1232, pTA1040
Bacillus subtilis, IF03022, pTA1060
Bacillus thuringiensis, Unknown
Bacillus thuringiensis, pGI3
Bacillus thuringiensis serovar darmstadiensis, INTA 14-4, pBMBt1
Bacillus thuringiensis serovar entomocidus, LBIT-113, pUIBI-1
Bacillus thuringiensis serovar israelensis, pTX14-1
Bacillus thuringiensis serovar konkukian str. 97-27, 97-27, chromosome
Bacillus thuringiensis serovar konkukian str. 97-27, 97-27, pBT9727
Bacillus thuringiensis serovar kurstaki, YBT-1520, pBMB2062
Bacillus thuringiensis serovar thuringiensis, H1.1, pGI1
Bacillus thuringiensis, 4Q2, pTX14-2
Bacillus thuringiensis, C002, DAN-involved plasmid
Bacillus thuringiensis, YBT-1520, pBMB9741
Bacillus thuringiensis, ssp.israelensis, serotype HI4, pTX14-3
Bacteriophage Sal3, chromosome
Bacteroides fragilis NCTC 9343, ATCC 25285 = NCTC 9343, chromosome
Bacteroides fragilis NCTC 9343, NCTC 9343 = ATCC 25285, pBF9343
Bacteroides fragilis YCH46, YCH46, chromosome
Bacteroides fragilis YCH46, YCH46, pBFY46
Bacteroides fragilis, IB143, pBI143
Bacteroides thetaiotaomicron VPI-5482, VPI-5482, chromosome
Bacteroides thetaiotaomicron, VPI-5482, p5482
Bartonella grahamii, pBGR1
Bartonella grahamii, pBGR2
Bartonella henselae, Houston-1, chromosome
Bartonella quintana str. Toulouse, Toulouse, chromosome
Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529, chromosome
Beet leafhopper transmitted virescence phytoplasma, pBLTVA-1
Beet leafhopper transmitted virescence phytoplasma, pBLTVA-2
Bifidobacterium breve, NCFB 2258, pCIBb1
Bifidobacterium catenulatum, L48, pBC1
Bifidobacterium longum, pMG1
Bifidobacterium longum, pTB6
Bifidobacterium longum NCC2705, NCC2705, chromosome
Bifidobacterium longum biovar Longum, DJO10A, pDOJH10L
Bifidobacterium longum biovar Longum, DJO10A, pDOJH10S
Bifidobacterium longum biovar Longum, KJ, pKJ36
Bifidobacterium longum biovar Longum, KJ, pKJ50
Bifidobacterium longum biovar Longum, VMKB44, pB44
Bifidobacterium longum, NCC2705, pBLO1
Bifidobacterium longum, RW041, PNAC2
Bifidobacterium longum, RW041, pNAC3
Bifidobacterium longum, RW048, pNAC1
Bifidobacterium pseudocatenulatum, VMKB4M, p4M
Birmingham IncP-alpha plasmid, Birmingham IncP-alpha plasmid
Bordetella avium 197N, 197N, chromosome
Bordetella bronchiseptica, RB50, chromosome
Bordetella parapertussis 12822, 12822, chromosome
Bordetella pertussis, Tohama I, chromosome
Borrelia burgdorferi, cp18-2
Borrelia burgdorferi B31, chromosome
Borrelia burgdorferi B31, cp26
Borrelia burgdorferi B31, cp32-1
Borrelia burgdorferi B31, cp32-3
Borrelia burgdorferi B31, cp32-4
Borrelia burgdorferi B31, cp32-6
Borrelia burgdorferi B31, cp32-7
Borrelia burgdorferi B31, cp32-8
Borrelia burgdorferi B31, cp32-9
Borrelia burgdorferi B31, cp9
Borrelia burgdorferi B31, lp17
Borrelia burgdorferi B31, lp21
Borrelia burgdorferi B31, lp25
Borrelia burgdorferi B31, lp28-1
Borrelia burgdorferi B31, lp28-2
Borrelia burgdorferi B31, lp28-3
Borrelia burgdorferi B31, lp28-4
Borrelia burgdorferi B31, lp36
Borrelia burgdorferi B31, lp38
Borrelia burgdorferi B31, lp5
Borrelia burgdorferi B31, lp54
Borrelia burgdorferi B31, lp56
Borrelia burgdorferi, B31, linear
Borrelia burgdorferi, Ip21, _no_value
Borrelia garinii PBi, PBi, chromosome linear
Borrelia garinii PBi, PBi, cp26
Borrelia garinii PBi, PBi, lp54
Bradyrhizobium japonicum USDA 110, USDA110, chromosome
Brevibacillus borstelensis, pHT926
Brevibacterium linens, LIM
Brucella abortus biovar 1 str. 9-941, 9-941, chromosome I
Brucella abortus biovar 1 str. 9-941, 9-941, chromosome II
Brucella melitensis 16M, 16M, chromosome I
Brucella melitensis 16M, 16M, chromosome II
Brucella melitensis biovar Abortus, 2308, chromosome I
Brucella melitensis biovar Abortus, 2308, chromosome II
Brucella suis 1330, 1330, chromosome I
Brucella suis 1330, 1330, chromosome II
Buchnera aphidicola, pLeu-Dn
Buchnera aphidicola (Baizongia pistaciae), pBBp1
Buchnera aphidicola (Schizaphis graminum), pLeu-Sg
Buchnera aphidicola str. APS (Acyrthosiphon pisum), pTrp
Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS, chromosome
Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS, pLeu
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae), chromosome
Buchnera aphidicola str. Sg (Schizaphis graminum), Sg, chromosome
Buchnera aphidicola, Pemphigus spyrothecae, pBPS1
Burkholderia mallei ATCC 23344, ATCC 23344, chromosome 1
Burkholderia mallei ATCC 23344, ATCC 23344, chromosome 2
Burkholderia pseudomallei 1710b, 1710b, chromosome I
Burkholderia pseudomallei 1710b, 1710b, chromosome II
Burkholderia pseudomallei K96243, K96243, chromosome 1
Burkholderia pseudomallei K96243, K96243, chromosome 2
Burkholderia sp. 383, 383, chromosome 1
Burkholderia sp. 383, 383, chromosome 2
Burkholderia sp. 383, 383, chromosome 3
Burkholderia thailandensis E264, E264; ATCC 700388, chromosome I
Burkholderia thailandensis E264, E264; ATCC 700388, chromosome II
Butyrivibrio fibrisolvens, pOM1
Caedibacter taeniospiralis, pKAP298
Campylobacter coli, pCC31
Campylobacter coli, 338, p3384
Campylobacter coli, 338, p3386
Campylobacter jejuni, pCJ419
Campylobacter jejuni RM1221, RM1221, chromosome
Campylobacter jejuni subsp. jejuni NCTC 11168, NCTC 11168, chromosome
Campylobacter jejuni, 81-176, pTet
Campylobacter jejuni, 81-176, pTet
Campylobacter jejuni, 81-176, pVir
Campylobacter lari, 300, pCL300
Candidatus Blochmannia floridanus, chromosome
Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN, chromosome
Candidatus Pelagibacter ubique HTCC1062, HTCC1062, chromosome
Carboxydothermus hydrogenoformans Z-2901, Z-2901, chromosome
Caulobacter crescentus CB15, CB15, chromosome
Chlamydia muridarum Nigg, Nigg, chromosome
Chlamydia muridarum Nigg, Nigg, pMoPn
Chlamydia trachomatis A/HAR-13, A/HAR-13, chromosome
Chlamydia trachomatis A/HAR-13, A/HAR-13, pCTA
Chlamydia trachomatis D/UW-3/CX, D/UW-3/CX, chromosome
Chlamydophila abortus S26/3, S26/3, chromosome
Chlamydophila caviae GPIC, chromosome
Chlamydophila caviae GPIC, pCpGP1
Chlamydophila felis Fe/C-56, Fe/C-56, chromosome
Chlamydophila pneumoniae AR39, AR39, chromosome
Chlamydophila pneumoniae CWL029, CWL029, chromosome
Chlamydophila pneumoniae J138, J138, chromosome
Chlamydophila pneumoniae TW-183, TW-183, chromosome
Chlamydophila psittaci, pCpA1
Chlorobium chlorochromatii CaD3, CaD3, chromosome
Chlorobium limicola, DSM 249, pCL1
Chlorobium tepidum TLS, TLS, chromosome
Chromobacterium violaceum ATCC 12472, ATCC 12472, chromosome
Citrobacter freundii, pCTX-M3
Citrobacter rodentium, DBS100, pCRP3
Clostridium acetobutylicum ATCC 824, ATCC 824, chromosome
Clostridium acetobutylicum ATCC 824, ATCC 824, pSOL1
Clostridium difficile, CD6, pCD6
Clostridium perfringens str. 13, 13, chromosome
Clostridium perfringens str. 13, 13, pCP13
Clostridium perfringens, F5603, pBCNF5603
Clostridium sp. MCF-1, MCF-1, indigenous plasmid
Clostridium tetani E88, Massachusetts, chromosome
Clostridium tetani, Massachusetts, pE88
Colwellia psychrerythraea 34H, 34H; BAA-681, chromosome
Comamonas testosteroni, PtL5, pPT1
Corynebacterium callunae, ATCC 15991, pCC1
Corynebacterium diphtheriae, pNGA2
Corynebacterium diphtheriae NCTC 13129, NCTC 13129, chromosome
Corynebacterium diphtheriae, S601, pNG2
Corynebacterium efficiens YS-314, YS-314, chromosome
Corynebacterium efficiens, YS-314, pCE2
Corynebacterium efficiens, YS-314, pCE3
Corynebacterium glutamicum, chromosome
Corynebacterium glutamicum, pSR1
Corynebacterium glutamicum ATCC 13032, ATCC 13032, chromosome
Corynebacterium glutamicum ATCC 13032, DSM 20300 = ATCC 13032, chromosome
Corynebacterium glutamicum, 1014, pXZ10142
Corynebacterium glutamicum, 1014, pXZ10145.1
Corynebacterium glutamicum, 22220, pAG3
Corynebacterium glutamicum, 22243, R-plasmid pAG1
Corynebacterium glutamicum, 227, pXZ608
Corynebacterium glutamicum, ATCC 13869, Bacillus lactofermentum ATCC 13869 native 4.45 kb
Corynebacterium glutamicum, ATCC 13869, pAM330
Corynebacterium glutamicum, ATCC 21086, pBl1
Corynebacterium glutamicum, ATCC 31832, pCG2
Corynebacterium glutamicum, ATCC31830, R-plasmid pCG4
Corynebacterium glutamicum, LP-6, pGA2
Corynebacterium glutamicum, LP-6, pTET3
Corynebacterium jeikeium, pK43
Corynebacterium jeikeium K411, K411 = NCTC 11915, chromosome
Corynebacterium jeikeium, A501, pA501
Corynebacterium jeikeium, A505, pA505
Corynebacterium jeikeium, B85766, pB85766
Corynebacterium jeikeium, CJ84, pCJ84
Corynebacterium jeikeium, K411; NCTC 11915, pKW4
Corynebacterium jeikeium, K64, pK64
Corynebacterium striatum, M82B, pTP10
Coxiella burnetii, QpH1
Coxiella burnetii RSA 493, RSA 493, chromosome
Coxiella burnetii RSA 493, RSA 493, pQpH1
Coxiella burnetii, R1140, QpDV
Cupriavidus necator, H16, megaplasmid pHG1
Cupriavidus necator, JMP134, pJP4
Dechloromonas aromatica RCB, RCB, chromosome
Dehalococcoides ethenogenes 195, 195, chromosome
Dehalococcoides sp. CBDB1, CBDB1, chromosome
Deinococcus radiodurans, R1, CP1
Deinococcus radiodurans, R1, MP1
Deinococcus radiodurans, R1, chromosome 1
Deinococcus radiodurans, R1, chromosome 2
Delftia acidovorans, B, pUO1
Desulfitobacterium hafniense Y51, Y51, chromosome
Desulfotalea psychrophila LSv54, LSv54 small plasmid
Desulfotalea psychrophila LSv54, LSv54, LSv54, large plasmid
Desulfotalea psychrophila LSv54, LSv54, chromosome
Desulfovibrio desulfuricans G20, G20, chromosome
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough, chromosome
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough, pDV
Dichelobacter nodosus, DN1
Dictyostelium discoideum, WS2162, Ddp5
Dictyostelium firmibasis, CR II 2B, Dfp1
Dictyostelium giganteum, DG61, Dgp1
Edwardsiella ictaluri, pEI1
Edwardsiella ictaluri, pEI2
Ehrlichia canis str. Jake, Jake, chromosome
Ehrlichia chaffeensis str. Arkansas, Arkansas, chromosome
Ehrlichia ruminantium str. Gardel, Gardel, chromosome
Ehrlichia ruminantium str. Welgevonden, Welgevonden, chromosome
Ehrlichia ruminantium str. Welgevonden, Welgevonden, chromosome
Eikenella corrodens, 1073, pMU1
Enterobacter aerogenes, R751
Enterobacter cloacae, IFO 3320, pEC01
Enterobacter sp. RFL1396, RFL1396, pEsp1396
Enterococcus faecalis, pAM373
Enterococcus faecalis, pAMalpha1
Enterococcus faecalis, pCF10
Enterococcus faecalis V583, V583, chromosome
Enterococcus faecalis V583, V583, pTEF1
Enterococcus faecalis V583, V583, pTEF2
Enterococcus faecalis V583, V583, pTEF3
Enterococcus faecalis, BFE 1071, pEF1071
Enterococcus faecalis, DS16, transposon Tn916
Enterococcus faecalis, RE25, pRE25
Enterococcus faecium, pJB01
Enterococcus faecium, pRUM
Erwinia amylovora, Ea88, pEA29
Erwinia amylovora, IH3-1, pEA1.7
Erwinia amylovora, IL-5, pEA2.8
Erwinia amylovora, LebB66, pEL60
Erwinia amylovora, UTRJ2, pEU30
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043, chromosome
Erwinia pyrifoliae, Ep1/96, pEP36
Erwinia sp. Ejp 556, Ejp 556, pEJ30
Erysipelothrix rhusiopathiae, S-1, pAP1
Erythrobacter litoralis HTCC2594, HTCC2594, chromosome
Erythrobacter litoralis HTCC2594, HTCC2594, chromosome
Escherichia coli, invasion plasmid pIS2
Escherichia coli, p1658/97
Escherichia coli, p9123
Escherichia coli, pC15-1a
Escherichia coli, pCol-let
Escherichia coli, pColK-K235
Escherichia coli, pFL129
Escherichia coli, pIGAL1
Escherichia coli, pJD884
Escherichia coli CFT073, CFT073, chromosome
Escherichia coli K12, K-12, chromosome
Escherichia coli O157:H7 EDL933, EDL933, chromosome
Escherichia coli O157:H7, EDL933, pO157
Escherichia coli O157:H7, O157:H7, chromosome
Escherichia coli W3110, K-12, chromosome
Escherichia coli, 29k, pECO29
Escherichia coli, 9705, p9705
Escherichia coli, A2363, pAPEC-O2-R
Escherichia coli, B171, pB171
Escherichia coli, EH41, pO113
Escherichia coli, HB101[pAT153], pLAB135
Escherichia coli, HB101[pAT153], pLAB446
Escherichia coli, JEF100, pCoo
Escherichia coli, K-12, R721
Escherichia coli, K12 P678-54, CloDF13
Escherichia coli, KL4, pKL1
Escherichia coli, LG74, pLG13
Escherichia coli, O157:H7, pO157
Escherichia coli, O157:H7, pOSAK1
Escherichia coli, W; ATCC 9637, pRK2
Flavobacterium psychrophilum, D12, pCP1
Flavobacterium sp., KP1, pFL1
Francisella tularensis subsp. holarctica, LVS, chromosome
Francisella tularensis subsp. novicida, F6168, pFNL10
Francisella tularensis subsp. tularensis SCHU S4, SCHU S4, chromosome
Francisella tularensis, LVS, pOM1
Frankia sp. CcI3, CcI3, chromosome
Frankia sp. CpI1, pFQ12
Fusobacterium nucleatum subsp. nucleatum ATCC 25586, ATCC 25586, chromosome
Fusobacterium nucleatum, 12230, pFN1
Fusobacterium nucleatum, FDC 27-17, pPA52
Fusobacterium nucleatum, KH9, pKH9
Geobacillus kaustophilus HTA426, HTA426, chromosome
Geobacillus kaustophilus HTA426, HTA426, pHTA426
Geobacillus stearothermophilus, TKO15, pSTK1
Geobacter metallireducens GS-15, GS-15, chromosome
Geobacter metallireducens GS-15, GS-15, unnamed
Geobacter sulfurreducens PCA, PCA, chromosome
Gloeobacter violaceus PCC 7421, PCC 7421, chromosome
Gluconobacter oxydans, pAG5
Gluconobacter oxydans 621H, 621H, chromosome
Gluconobacter oxydans 621H, 621H, pGOX1
Gluconobacter oxydans 621H, 621H, pGOX2
Gluconobacter oxydans 621H, 621H, pGOX3
Gluconobacter oxydans 621H, 621H, pGOX4
Gluconobacter oxydans 621H, 621H, pGOX5
Gluconobacter oxydans, DSM 3504, pGO128
Gordonia westfalica, type strain: DSM44215, pKB1
Gracilaria chilensis, Gch3937
Gracilaria chilensis, Gch7220
Gracilaria robusta, Gro4059
Gracilaria robusta, Gro4970
Gracilariopsis lemaneiformis, Gle4293
Haemophilus ducreyi 35000HP, 35000HP, chromosome
Haemophilus ducreyi, ATCC 27722, pNAD1
Haemophilus influenzae, ICEhin1056
Haemophilus influenzae 86-028NP, 86-028NP, chromosome
Haemophilus influenzae Rd KW20, chromosome
Haemophilus influenzae biotype aegyptius, pF1947
Haemophilus influenzae biotype aegyptius, pF3031
Haemophilus influenzae biotype aegyptius, BPF, pF3028
Haemophilus parasuis, pHS-Rec
Haemophilus parasuis, HS1543, pHS-Tet
Haemophilus somnus 129PT, 129Pt, pHS129
Hafnia alvei, MISC230, pAlvA
Hafnia alvei, MISC261, pAlvB
Hahella chejuensis KCTC 2396, KCTC 2396, chromosome
Haloarcula marismortui ATCC 43049, ATCC 43049, pNG100
Haloarcula marismortui ATCC 43049, ATCC 43049, pNG200
Haloarcula marismortui ATCC 43049, ATCC 43049, pNG300
Haloarcula marismortui ATCC 43049, ATCC 43049, pNG400
Haloarcula marismortui ATCC 43049, ATCC 43049, pNG500
Haloarcula marismortui ATCC 43049, ATCC 43049, pNG600
Haloarcula marismortui ATCC 43049, ATCC 43049, pNG700
Haloarcula sp. AS7094, AS7094, pSCM201
Halobacterium salinarum, _no_value
Halobacterium salinarum, J7, pHH205
Halobacterium sp. NRC-1, NRC-1, pNRC100
Halobacterium sp. NRC-1, NRC-1; ATCC 700922, pNRC200
Halorubrum saccharovorum, pZMX101
Helicobacter hepaticus ATCC 51449, ATCC 51449, chromosome
Helicobacter pylori, pHP51
Helicobacter pylori, pHel5
Helicobacter pylori 26695, 26695, chromosome
Helicobacter pylori J99, J99, chromosome
Helicobacter pylori, 489, pHP489
Helicobacter pylori, AL202, pAL202
Helicobacter pylori, HPM180, pHPM180
Helicobacter pylori, HPM186, pHPM186
Helicobacter pylori, HPM8, pHPM8
Helicobacter pylori, OU145B, pHPO100
Helicobacter pylori, P8, pHel4
Histophilus somni, small plasmid
Histophilus somni, 9L, p9L
Idiomarina loihiensis L2TR, L2TR, chromosome
IncN plasmid R46, IncN plasmid R46
IncP-1beta multiresistance plasmid pB8, pB8
IncQ-like plasmid pIE1107, pIE1107
Jannaschia sp. CCS1, CCS1, chromosome
Klebsiella pneumoniae, pJHCMW1
Klebsiella pneumoniae, pKlebB-k17/80
Klebsiella pneumoniae, 2kI, pKPN2
Klebsiella pneumoniae, BM4493, pIP843
Klebsiella pneumoniae, CG43, pLVPK
Klebsiella pneumoniae, NTUH-K2044, pK2044
Klebsiella sp. KCL-2, KCL-2, pMGD2
Kluyveromyces lactis, pKD1
Kluyveromyces waltii, CBS 6430 from the CBS Collection, Delft, _no_value
Lactobacillus acidophilus NCFM, NCFM, chromosome
Lactobacillus acidophilus, TK8912, pLA103
Lactobacillus acidophilus, TK8912, pLA106
Lactobacillus brevis, ABBC45, pRH45II
Lactobacillus casei, pYIT356
Lactobacillus casei, CRL705, pRC18
Lactobacillus delbrueckii subsp. bulgaricus, pLBB1
Lactobacillus delbrueckii subsp. lactis, pN42
Lactobacillus delbrueckii subsp. lactis, CRL1212, pLL1212
Lactobacillus delbrueckii subsp. lactis, JCL414, pJBL2
Lactobacillus delbrueckii, WS58, pWS58
Lactobacillus fermentum, pLME300
Lactobacillus fermentum, KC5b, pKC5b
Lactobacillus helveticus subsp. jugurti, SBT2161, pLJ1
Lactobacillus helveticus, ATCC15009, pLH1
Lactobacillus johnsonii NCC 533, NCC 533, chromosome
Lactobacillus plantarum, pLP2000
Lactobacillus plantarum, pLP9000
Lactobacillus plantarum, pPB1
Lactobacillus plantarum WCFS1, WCFS1, chromosome
Lactobacillus plantarum WCFS1, WCFS1, pWCFS101
Lactobacillus plantarum WCFS1, WCFS1, pWCFS102
Lactobacillus plantarum WCFS1, WCFS1, pWCFS103
Lactobacillus plantarum, 5057, pMD5057
Lactobacillus plantarum, L137, pLTK2
Lactobacillus plantarum, NC7, p256
Lactobacillus reuteri, 100-23, pGT232
Lactobacillus reuteri, AE78, endogenous plasmid
Lactobacillus reuteri, AE78, pTE44
Lactobacillus sakei, pRV500
Lactobacillus sakei subsp. sakei 23K, 23K, chromosome
Lactobacillus salivarius subsp. salivarius UCC118, UCC118, pMP118
Lactobacillus salivarius subsp. salivarius UCC118, UCC118, pSF118-20
Lactobacillus salivarius subsp. salivarius UCC118, UCC118, pSF118-44
Lactococcus lactis, pCIS3
Lactococcus lactis, pCL2.1
Lactococcus lactis, pCRL291.1
Lactococcus lactis, pND324
Lactococcus lactis, pWV01
Lactococcus lactis subsp. cremoris, 712, pAG6
Lactococcus lactis subsp. cremoris, HP, pHP003
Lactococcus lactis subsp. cremoris, NIZO B40, pNZ4000
Lactococcus lactis subsp. cremoris, P8-2-47, pBM02
Lactococcus lactis subsp. lactis, pAH82
Lactococcus lactis subsp. lactis, pMN5
Lactococcus lactis subsp. lactis Il1403, IL1403, chromosome
Lactococcus lactis subsp. lactis bv. diacetylactis, pS7a
Lactococcus lactis subsp. lactis bv. diacetylactis, pS7b
Lactococcus lactis subsp. lactis bv. diacetylactis, DRC1, cryptic plasmid pDR1-1
Lactococcus lactis subsp. lactis bv. diacetylactis, DRC1, cryptic plasmid pDR1-1B
Lactococcus lactis subsp. lactis, IPLA 972, pBL1
Lactococcus lactis subsp. lactis, UC317, pCI305
Lactococcus lactis, CRL1127, pCRL1127
Lactococcus lactis, DCH-4, pSRQ700
Lactococcus lactis, DPC220, pAH33
Lactococcus lactis, DPC3147, pMRC01
Lactococcus lactis, IL964, pIL105
Lactococcus lactis, K214, pK214
Lactococcus lactis, W-1, pSRQ800
Lactococcus lactis, W-37, pSRQ900
Laribacter hongkongensis, HLHK8, pHLHK8
Legionella pneumophila str. Lens, Lens, chromosome
Legionella pneumophila str. Lens, Lens, pLPL
Legionella pneumophila str. Paris, Paris, chromosome
Legionella pneumophila str. Paris, Paris, pLPP
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Philadelphia 1, chromosome
Leifsonia xyli subsp. xyli str. CTCB07, CTCB07, chromosome
Leptolyngbya boryana, pPBS1
Leptolyngbya foveolarum, M-43, pPF1
Leptolyngbya sp. PCC 6402, PCC 6402, pRF1
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, Fiocruz L1-130, chromosome I
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, Fiocruz L1-130, chromosome II
Leptospira interrogans serovar Lai str. 56601, 56601, chromosome I
Leptospira interrogans serovar Lai str. 56601, 56601, chromosome II
Leptospirillum ferrooxidans, ATCC 49879, p49879.1
Leptospirillum ferrooxidans, ATCC 49879, p49879.2
Leuconostoc citreum, pIH01
Leuconostoc citreum, 22R, pLC22R
Leuconostoc mesenteroides subsp. mesenteroides, FR52, pFR18
Leuconostoc mesenteroides subsp. mesenteroides, Y110, pTXL1
Leuconostoc mesenteroides, SY2, pFMBL1
Listeria innocua Clip11262, Clip11262, chromosome
Listeria innocua, Clip11262, pLI100
Listeria monocytogenes EGD-e, EGD-e, chromosome
Listeria monocytogenes str. 4b F2365, 4b F2365, chromosome
Listonella anguillarum, 775, pJM1
Magnetospirillum magneticum AMB-1, AMB-1, chromosome
Mannheimia haemolytica, pCCK3259
Mannheimia haemolytica, pMHSCS1
Mannheimia succiniciproducens MBEL55E, MBEL55E, chromosome
Mannheimia varigena, pMVSCS1
Marinococcus halophilus, DSM 20408T, pPL1
Mesoplasma florum L1, L1; ATCC 33453, chromosome
Mesorhizobium loti MAFF303099, MAFF303099, chromosome
Mesorhizobium loti MAFF303099, MAFF303099, pMLa
Mesorhizobium loti MAFF303099, MAFF303099, pMLb
Methanocaldococcus jannaschii DSM 2661, DSM 2661, extra-chromosomal element
Methanocaldococcus jannaschii DSM 2661, DSM 2661, small extra-chromosomal element
Methanococcus maripaludis, C5, pURB500
Methanohalophilus mahii, pML
Methanosarcina acetivorans, C2A, pC2A
Methanothermobacter thermautotrophicus, Marburg, pME2001
Methanothermobacter thermautotrophicus, THF, _no_value
Methanothermobacter thermautotrophicus, Z-245, _no_value
Methanothermobacter thermautotrophicus, ZH3, pME2200
Methylococcus capsulatus str. Bath, Bath, chromosome
Methylophaga thalassica, S1, 2kb cryptic plasmid
Micrococcus luteus, NCIMB 13267, pMLU1
Micrococcus sp. 28, 28, pSD10
Microcystis aeruginosa, Kutzing, pMA2
Microcystis aeruginosa, Kutzing, small Plasmid pMA1
Microcystis aeruginosa, UV025, pMa025
Micromonospora rosaria, SCC2095, pMR2
Microscilla sp. PRE1, PRE1, pSD15
Moorella thermoacetica ATCC 39073, ATCC 39073, chromosome
Moraxella catarrhalis, pEMCJH03
Moraxella sp. TA144, pTA144 Dw
Moraxella sp. TA144, pTA144 Up
Mycobacterium avium, pVT2
Mycobacterium avium subsp. paratuberculosis str. k10, k10, chromosome
Mycobacterium bovis AF2122/97, AF2122/97, chromosome
Mycobacterium celatum, pCLP
Mycobacterium leprae TN, TN, chromosome
Mycobacterium tuberculosis CDC1551, CDC1551, chromosome
Mycobacterium tuberculosis H37Rv, H37Rv, chromosome
Mycobacterium ulcerans, AGY99, pMUM001
Mycoplasma capricolum subsp. capricolum ATCC 27343, ATCC 27343, chromosome
Mycoplasma gallisepticum R, R, chromosome
Mycoplasma genitalium G37, G-37, chromosome
Mycoplasma hyopneumoniae 232, chromosome
Mycoplasma hyopneumoniae 7448, 7448, chromosome
Mycoplasma hyopneumoniae J, J, chromosome
Mycoplasma mobile 163K, 163K, chromosome
Mycoplasma mycoides subsp. mycoides SC str. PG1, PG1, chromosome
Mycoplasma penetrans HF-2, HF-2, chromosome
Mycoplasma pneumoniae M129, M129, chromosome
Mycoplasma pulmonis UAB CTIP, UAB CTIP, chromosome
Mycoplasma sp. bovine group 7, pBG7AU
Mycoplasma synoviae 53, 53, chromosome
Natrinema sp. CX2021, CX2021, pZMX201
Natronobacterium sp. AS-7091, AS-7091, pNB101
Natronomonas pharaonis DSM 2160, type strain: DSM 2160 = Gabara, PL131
Natronomonas pharaonis DSM 2160, type strain: DSM 2160 = Gabara, PL23
Neisseria gonorrhoeae FA 1090, FA 1090, chromosome
Neisseria gonorrhoeae, GC1-182, pJD4
Neisseria lactamica, pNL01
Neisseria meningitidis, pJS-B
Neisseria meningitidis MC58, MC58, chromosome
Neisseria meningitidis Z2491, Z2491, chromosome
Neorickettsia sennetsu str. Miyayama, Miyayama, chromosome
Neurospora intermedia, 3983, Harbin-1 plasmid
Nitrobacter winogradskyi Nb-255, Nb-255, chromosome
Nitrosococcus oceani ATCC 19707, ATCC 19707, chromosome
Nitrosomonas europaea ATCC 19718, ATCC 19718, chromosome
Nitrosomonas sp., ENI-11, pAYL
Nitrosomonas sp., ENI-11, pAYS
Nitrosospira multiformis ATCC 25196, ATCC 25196, chromosome 1
Nocardia farcinica IFM 10152, IFM 10152, chromosome
Nocardia farcinica IFM 10152, IFM 10152, pNF1
Nocardia farcinica IFM 10152, IFM 10152, pNF2
Nostoc sp. PCC 7120, pCC7120beta
Nostoc sp. PCC 7120, pCC7120delta
Nostoc sp. PCC 7120, pCC7120epsilon
Nostoc sp. PCC 7120, pCC7120gamma
Nostoc sp. PCC 7120, pCC7120zeta
Nostoc sp. PCC 7120, PCC7120, chromosome
Nostoc sp. PCC 7120, PCC7120, pCC7120alpha
Novosphingobium aromaticivorans DSM 12444, DSM 12444, chromosome
Novosphingobium aromaticivorans, F199, pNL1
Oceanobacillus iheyensis HTE831, HTE831, chromosome
Oenococcus oeni, pRS2
Oenococcus oeni, pRS3
Oenococcus oeni, M1, pOM1
Oligotropha carboxidovorans, OM5 = DSM 1227, pHCG3
Onion yellows phytoplasma OY-M, onion yellows, chromosome
Pantoea citrea, 1056R, pUCD5000
Pantoea citrea, ATCC31623, pPZG500
Parachlamydia sp. UWE25, UWE25, chromosome
Paracoccus pantotrophus, DSM 11072, pWKS1
Pasteurella multocida, pCCK381
Pasteurella multocida, pCCK647
Pasteurella multocida, pJR1
Pasteurella multocida, pJR2
Pasteurella multocida subsp. multocida str. Pm70, PM70, chromosome
Pasteurella multocida, Pm1096, pIG1
Pasteurella trehalosi, pCCK13698
Peanut witches-broom phytoplasma, pPNWB
Pediococcus acidilactici, H, pSMB74
Pediococcus pentosaceus, ATCC43200, pMD136
Pediococcus pentosaceus, ATCC43200, pMD136
Pelobacter carbinolicus DSM 2380, DSM 2380, chromosome
Pelodictyon luteolum DSM 273, DSM 273, chromosome
Pelodiscus sinensis, chromosome
Phage Gifsy-1, chromosome
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 1
Photobacterium profundum, ss9, chromosome 2
Photobacterium profundum, ss9, chromosome 2
Photobacterium profundum, ss9, chromosome 2
Photobacterium profundum, ss9, chromosome 2
Photobacterium profundum, ss9, chromosome 2
Photobacterium profundum, ss9, chromosome 2
Photobacterium profundum, ss9, chromosome 2
Photobacterium profundum, ss9, chromosome 2
Photobacterium profundum, ss9, pPBPR1
Photorhabdus luminescens subsp. laumondii TTO1, TTO1, chromosome
Phytoplasma sp., Khon Kaen, phytoplasma specific extrachromosomal DNA
Pirellula sp., 1, chromosome
Plasmid ColA, ColA
Plasmid ColE1, ColE1
Plasmid ColIb-P9, ColIb-P9
Plasmid F, Plasmid F
Plasmid NTP16, NTP16
Plasmid R100, R100
Plasmid Rts1, Rts1
Plasmid pADB201, pADB201
Plasmid pAL5000, pAL5000
Plasmid pB3, pB3
Plasmid pBC16, pBC16
Plasmid pC30il, pC30il
Plasmid pCHL1, pCHL1
Plasmid pCU1, pCU1
Plasmid pHV2, pHV2
Plasmid pIJ101, pIJ101
Plasmid pIM13, pIM13
Plasmid pIP404, pIP404
Plasmid pIPO2T, pIPO2T
Plasmid pJD1, pJD1
Plasmid pKYM, pKYM
Plasmid pLS1, pLS1
Plasmid pNE131, pNE131
Plasmid pNKH43, pNKH43
Plasmid pNS1, pNS1
Plasmid pRL1063a, pRL1063a
Plasmid pRL765, pRL765
Plasmid pSB102, pSB102
Plasmid pT181, pT181
Plasmid pT48, pT48
Plasmid pUB110, pUB110
Plasmid pUB110, pUB110
Porphyra pulchra, Pp6427
Porphyra pulchra, Pp6859
Porphyromonas gingivalis W83, W83, chromosome
Prevotella ruminicola, T31, pRAM4
Prochlorococcus marinus str. MIT 9312, MIT 9312, chromosome
Prochlorococcus marinus str. MIT 9313, MIT9313, chromosome
Prochlorococcus marinus str. NATL2A, NATL2A, chromosome
Prochlorococcus marinus subsp. marinus str. CCMP1375, CCMP1375; SS120, chromosome
Prochlorococcus marinus subsp. pastoris str. CCMP1986, MED4, chromosome
Propionibacterium acidipropionici, E214, pRGO1
Propionibacterium acnes KPA171202, KPA171202, chromosome
Propionibacterium freudenreichii, LMG16545, p545
Propionibacterium granulosum, PF283, cryptic plasmid pPG01
Propionibacterium jensenii, DF1, pLME106
Proteus vulgaris, ATCC13315, pPvu1
Proteus vulgaris, UR-75, Rts1
Pseudoalteromonas haloplanktis TAC125, TAC125, chromosome I
Pseudoalteromonas haloplanktis TAC125, TAC125, chromosome II
Pseudoalteromonas sp. PS1M3, pPS1M3
Pseudomonas aeruginosa PAO1, PAO1, chromosome
Pseudomonas aeruginosa, Ps142, Rms149
Pseudomonas alcaligenes, NCIB 9867, pRA2
Pseudomonas fluorescens Pf-5, Pf-5, chromosome
Pseudomonas fluorescens PfO-1, PfO-1, chromosome
Pseudomonas fulva, IF-4, pNI10
Pseudomonas putida, pWW0
Pseudomonas putida, pYQ39
Pseudomonas putida KT2440, KT2440, chromosome
Pseudomonas putida, NCIB 9816-4, pDTG1
Pseudomonas putida, P8, pPP81
Pseudomonas resinovorans, pCAR1
Pseudomonas sp. ADP, ADP, pADP-1
Pseudomonas sp. ND6, ND6, pND6-1
Pseudomonas sp. S-47, p47L
Pseudomonas sp. S-47, p47S
Pseudomonas syringae pv. maculicola, ES4326, pPMA4326A
Pseudomonas syringae pv. maculicola, ES4326, pPMA4326B
Pseudomonas syringae pv. maculicola, ES4326, pPMA4326C
Pseudomonas syringae pv. maculicola, ES4326, pPMA4326D
Pseudomonas syringae pv. maculicola, ES4326, pPMA4326E
Pseudomonas syringae pv. maculicola, M6, pFKN
Pseudomonas syringae pv. phaseolicola 1448A, 1448A; BAA-978, chromosome
Pseudomonas syringae pv. phaseolicola 1448A, 1448A; BAA-978, large plasmid
Pseudomonas syringae pv. phaseolicola 1448A, 1448A; BAA-978, small plasmid
Pseudomonas syringae pv. syringae B728a, B728a, chromosome
Pseudomonas syringae pv. syringae, A2, pPSR1
Pseudomonas syringae pv. tomato str. DC3000, DC3000, chromosome
Pseudomonas syringae pv. tomato str. DC3000, DC3000, pDC3000A
Pseudomonas syringae pv. tomato str. DC3000, DC3000, pDC3000B
Psychrobacter arcticum 273-4, 273-4, chromosome
Pyrococcus abyssi GE5, GE5, pGT5
Ralstonia eutropha JMP134, JMP134, 1
Ralstonia eutropha JMP134, JMP134, chromosome 1
Ralstonia eutropha JMP134, JMP134, chromosome 2
Ralstonia eutropha JMP134, JMP134, megaplasmid
Ralstonia metallidurans CH34, CH34, pMOL28
Ralstonia metallidurans CH34, CH34, pMOL30
Ralstonia pickettii, pMBCP
Ralstonia solanacearum, pJTPS1
Ralstonia solanacearum GMI1000, GMI1000, chromosome
Ralstonia solanacearum GMI1000, GMI1000, megaplasmid
Rhizobium etli CFN 42, CFN 42, chromosome
Rhizobium etli CFN 42, CFN 42, p42f
Rhizobium etli, CFN42, symbiotic plasmid p42d
Rhizobium sp. NGR234, pNGR234a
Rhodobacter blasticus, pMG160
Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808, B
Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808, C
Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808, D
Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808, chromosome 1
Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808, chromosome 2
Rhodococcus equi, 103, virulence plasmid
Rhodococcus equi, ATCC33701, pREAT701 (p33701)
Rhodococcus erythropolis, BD2, pBD2
Rhodococcus erythropolis, DSM 8424, pRE8424
Rhodococcus erythropolis, NI86/21, pFAJ2600
Rhodococcus opacus, B-4, pKNR01
Rhodococcus opacus, B-4, pKNR02
Rhodococcus sp. B264-1, B264-1, pB264
Rhodoferax ferrireducens DSM 15236, DSM 15236, chromosome
Rhodopseudomonas palustris BisB18, BisB18, chromosome
Rhodopseudomonas palustris CGA009, CGA009, chromosome
Rhodopseudomonas palustris HaA2, HaA2, chromosome
Rhodopseudomonas palustris, CGA009, pRPA
Rhodospirillum rubrum ATCC 11170, ATCC 11170, chromosome
Rhodothermus marinus, R-21, pRM21
Rickettsia conorii str. Malish 7, Malish 7, chromosome
Rickettsia felis URRWXCal2, URRWXCal2; California 2, chromosome
Rickettsia felis URRWXCal2, URRWXCal2; California 2, pRF
Rickettsia felis URRWXCal2, URRWXCal2; California 2, pRFdelta
Rickettsia prowazekii str. Madrid E, Madrid E, chromosome
Rickettsia typhi str. Wilmington, Wilmington, chromosome
Riemerella anatipestifer, 10, pCFC1
Riemerella anatipestifer, 20, pCFC2
Ruegeria sp. PR1b, PR1b, pSD20
Ruegeria sp. PR1b, PR1b, pSD25
Ruminococcus flavefaciens, R13e2, pBAW301
Saccharomyces cerevisiae, A364A, 2 micron circle plasmid
Saccharophagus degradans 2-40, 2-40, chromosome
Salinibacter ruber DSM 13855, DSM 13855; M31, chromosome
Salinibacter ruber DSM 13855, DSM 13855; M31, pSR35
Salmonella choleraesuis, 79500, pSFD10
Salmonella enterica subsp. enterica serovar Berta, pBERT
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67, pSC138
Salmonella enterica subsp. enterica serovar Choleraesuis, RF-1, 50k virulence plasmid
Salmonella enterica subsp. enterica serovar Choleraesuis, RF-1, cryptic plasmid
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150, chromosome
Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2, chromosome
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18, chromosome
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18, pHCM1
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18, pHCM2
Salmonella enterica subsp. enterica serovar Typhimurium, pFPTB1
Salmonella enterica, OU7025, pOU1113
Salmonella enteritidis, pB
Salmonella enteritidis, pC
Salmonella enteritidis, pK
Salmonella enteritidis, pP
Salmonella typhi, R27
Salmonella typhi, R27
Salmonella typhimurium, R64
Salmonella typhimurium, pSC101
Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720, chromosome
Salmonella typhimurium LT2, SGSC1412, pSLT
Salmonella typhimurium, G8430, pU302L
Salmonella typhimurium, G8430, pU302S
Selenomonas ruminantium, pJJM1
Selenomonas ruminantium, 19, pSRD191
Selenomonas ruminantium, HD4, pSR1
Selenomonas ruminantium, JW13, pJW1
Selenomonas ruminantium, S20, pONE429
Selenomonas ruminantium, S20, pONE430
Serratia marcescens, R478
Shewanella oneidensis MR-1, MR-1, chromosome
Shewanella oneidensis MR-1, MR-1, megaplasmid
Shigella boydii Sb227, Sb227, chromosome
Shigella dysenteriae Sd197, Sd197, chromosome
Shigella flexneri, virulence plasmid pWR501
Shigella flexneri 2a, p2457TS2
Shigella flexneri 2a str. 2457T, 2457T, chromosome
Shigella flexneri 2a str. 301, 301, chromosome
Shigella flexneri 2a str. 301, 301, pCP301
Shigella sonnei Ss046, Ss046, chromosome
Shigella sonnei Ss046, Ss046, pSS_046
Shigella sonnei, colicin type 7, ColJs
Silicibacter pomeroyi DSS-3, DSS-3, chromosome
Silicibacter pomeroyi DSS-3, DSS-3, megaplasmid
Sinorhizobium meliloti, pRm1132f
Sinorhizobium meliloti 1021, 1021, chromosome
Sinorhizobium meliloti 1021, 1021, pSymB
Sinorhizobium meliloti, 1021, pSymA
Sodalis glossinidius, pSG1
Sodalis glossinidius, pSG1
Sodalis glossinidius, pSG2
Sodalis glossinidius, pSG2
Sodalis glossinidius, pSG3
Sodalis glossinidius, pSG4
Sodalis glossinidius, pSG4
Sodalis glossinidius str. morsitans, morsitans, chromosome
Sphingomonas sp. A1, A1, pA1
Sphingomonas xenophaga, QYY, pSx-Qyy
Spiroplasma citri, BR3-3X, pBJS-O
Spiroplasma citri, GII3, pSci1
Spiroplasma citri, GII3, pSci2
Spiroplasma citri, GII3, pSci3
Spiroplasma citri, GII3, pSci4
Spiroplasma citri, GII3, pSci5
Spiroplasma citri, GII3, pSci6
Spiroplasma kunkelii, CR2-3x, pSKU146
Staphylococcus aureus, 21kb plasmid
Staphylococcus aureus, pC194
Staphylococcus aureus, pC221
Staphylococcus aureus, pC221
Staphylococcus aureus, pC223
Staphylococcus aureus, pE194
Staphylococcus aureus, pKH6
Staphylococcus aureus, pKH7
Staphylococcus aureus, pLW043
Staphylococcus aureus, pMW2
Staphylococcus aureus, pNVH01
Staphylococcus aureus, pOX7
Staphylococcus aureus, pOX7
Staphylococcus aureus, pS194
Staphylococcus aureus, pSK3
Staphylococcus aureus, pSK41
Staphylococcus aureus, pSK6
Staphylococcus aureus, pSN2
Staphylococcus aureus, pT181
Staphylococcus aureus, pUB101
Staphylococcus aureus RF122, RF122, chromosome
Staphylococcus aureus subsp. aureus COL, COL, chromosome
Staphylococcus aureus subsp. aureus COL, COL, pT181
Staphylococcus aureus subsp. aureus MRSA252, MRSA252, chromosome
Staphylococcus aureus subsp. aureus MSSA476, pSAS
Staphylococcus aureus subsp. aureus MSSA476, MSSA476, chromosome
Staphylococcus aureus subsp. aureus MW2, MW2, chromosome
Staphylococcus aureus subsp. aureus Mu50, Mu50, VRSAp
Staphylococcus aureus subsp. aureus Mu50, Mu50, chromosome
Staphylococcus aureus subsp. aureus N315, N315, chromosome
Staphylococcus aureus subsp. aureus N315, N315, pN315
Staphylococcus aureus subsp. aureus NCTC 8325, NCTC 8325, chromosome
Staphylococcus aureus subsp. aureus USA300, USA300; FPR3757, chromosome
Staphylococcus aureus, CMRSA, pWBG738
Staphylococcus aureus, SA5, pKH3
Staphylococcus aureus, TY4, ETB plasmid
Staphylococcus epidermidis ATCC 12228, ATCC 12228, chromosome
Staphylococcus epidermidis ATCC 12228, ATCC 12228, pSE-12228-01
Staphylococcus epidermidis ATCC 12228, ATCC 12228, pSE-12228-02
Staphylococcus epidermidis ATCC 12228, ATCC 12228, pSE-12228-03
Staphylococcus epidermidis ATCC 12228, ATCC 12228, pSE-12228-04
Staphylococcus epidermidis ATCC 12228, ATCC 12228, pSE-12228-05
Staphylococcus epidermidis ATCC 12228, ATCC 12228, pSE-12228-06
Staphylococcus epidermidis RP62A phage SP-beta, chromosome
Staphylococcus epidermidis RP62A, RP62A, pSERP
Staphylococcus epidermidis, CH, pSepCH
Staphylococcus epidermidis, SK398, pSK639
Staphylococcus haemolyticus JCSC1435, JCSC1435, chromosome
Staphylococcus haemolyticus JCSC1435, JCSC1435, pSHaeA
Staphylococcus haemolyticus JCSC1435, JCSC1435, pSHaeB
Staphylococcus haemolyticus JCSC1435, JCSC1435, pSHaeC
Staphylococcus lentus, pSTE2
Staphylococcus lugdunensis, 995, pLUG10
Staphylococcus pasteuri, pSP187
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305, ATCC 15305, pSSP1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305, ATCC 15305, pSSP2
Staphylococcus saprophyticus subsp. saprophyticus, ATCC 15305, chromosome
Staphylococcus sciuri, pSCFS1
Staphylococcus sciuri subsp. sciuri, pACK6
Staphylococcus warneri, pSW174
Staphylococcus warneri, pSW49
Staphylococcus warneri, ISK-1, pPI-1
Staphylococcus warneri, ISK-1, pPI-2
Streptococcus agalactiae, pGB354
Streptococcus agalactiae, pIP501
Streptococcus agalactiae 2603V/R, 2603V/R, chromosome
Streptococcus agalactiae A909, A909, chromosome
Streptococcus agalactiae NEM316, NEM316, chromosome
Streptococcus mutans UA159, UA159, chromosome
Streptococcus mutans, LM7, pLM7
Streptococcus mutans, UA140, pUA140
Streptococcus pneumoniae R6, R6, chromosome
Streptococcus pneumoniae TIGR4, TIGR4; ATCC BAA-334, chromosome
Streptococcus pneumoniae, A6011, pSMB1
Streptococcus pneumoniae, D39, pDP1
Streptococcus pyogenes, pDB101
Streptococcus pyogenes, pSM19035
Streptococcus pyogenes M1 GAS, SF370, chromosome
Streptococcus pyogenes MGAS10394, MGAS10394, chromosome
Streptococcus pyogenes MGAS315, MGAS315, chromosome
Streptococcus pyogenes MGAS8232, MGAS8232, chromosome
Streptococcus pyogenes SSI-1, SSI-1, chromosome
Streptococcus pyogenes phage 5005.3, chromosome
Streptococcus pyogenes phage 6180.4, chromosome
Streptococcus pyogenes, 71-724, pDN571
Streptococcus suis, DAT1, pSSU1
Streptococcus thermophilus, pER13
Streptococcus thermophilus, pSMQ308
Streptococcus thermophilus CNRZ1066, CNRZ1066, chromosome
Streptococcus thermophilus LMG 18311, LMG 18311, chromosome
Streptococcus thermophilus, 2783, pt38
Streptococcus thermophilus, SMQ-172, pSMQ172
Streptococcus thermophilus, SMQ-173, pSMQ173b
Streptococcus thermophilus, ST135, pER35
Streptococcus thermophilus, ST136, pER36
Streptococcus thermophilus, ST2-1, pND103
Streptococcus thermophilus, ST371, pER371
Streptomyces albulus, IFO 14147, pNO33
Streptomyces avermitilis MA-4680, MA-4680, SAP1
Streptomyces avermitilis MA-4680, MA-4680, chromosome
Streptomyces clavuligerus, NRRL 3585, pSCL
Streptomyces coelicolor, 2 SCP2*
Streptomyces coelicolor A3(2), A3(2), SCP2
Streptomyces coelicolor, A3(2), SCP1
Streptomyces coelicolor, A3(2), chromosome
Streptomyces cyaneus, ATCC14921, pSA1.1
Streptomyces flavovirens, pSN22
Streptomyces lividans, 1326, SLP2
Streptomyces natalensis, pSNA1
Streptomyces phaeochromogenes, NRRL-B3559, pJV1
Streptomyces rochei, 7434AN4, pSLA2-L
Streptomyces sp. EN27, EN27, pEN2701
Streptomyces sp. F11, F11, pFP11
Streptomyces sp. FQ1, FQ1, pFP1
Streptomyces violaceoruber, SANK95570, pSV2
Sulfolobus islandicus, pARN3
Sulfolobus islandicus, pARN4
Sulfolobus islandicus, pHVE14
Sulfolobus islandicus, pING1
Sulfolobus islandicus, pKEF9
Sulfolobus islandicus, HEN7H2, pHEN7
Sulfolobus islandicus, REN1H1, pRN1
Sulfolobus islandicus, REN1H1, pRN2
Sulfolobus neozealandicus, pORA1
Sulfolobus solfataricus, IT3, pIT3
Sulfolobus sp. NOB8H2, NOB8H2, pNOB8
Sulfolobus tengchongensis, pTC
Symbiobacterium thermophilum, IAM14863, chromosome
Synechococcus elongatus PCC 6301, PCC6301, chromosome
Synechococcus elongatus PCC 7942, pUH24
Synechococcus elongatus PCC 7942, PCC 7942, chromosome
Synechococcus elongatus PCC 7942, PCC 7942, pANL
Synechococcus sp. CC9605, CC9605, chromosome
Synechococcus sp. CC9902, CC9902, chromosome
Synechococcus sp. JA-2-3Ba(2-13), JA-2-3Ba(2-13), chromosome
Synechococcus sp. JA-3-3Ab, JA-3-3Ab, chromosome
Synechococcus sp. PCC 7002, PR-6, pAQ1
Synechococcus sp. WH 8102, WH8102, chromosome
Synechococcus sp., MA4, pMA4
Synechocystis sp. PCC 6803, pSYSX
Synechocystis sp. PCC 6803, PCC 6803, pCB2.4
Synechocystis sp. PCC 6803, PCC 6803, pSYSA
Synechocystis sp. PCC 6803, PCC 6803, pSYSG
Synechocystis sp. PCC 6803, PCC 6803, pSYSM
Synechocystis sp. PCC 6803, PCC6803, chromosome
Syntrophus aciditrophicus SB, chromosome
Tetragenococcus halophilus, PB18, pSKPB18
Thanatephorus cucumeris, pRS64-2
Thermoanaerobacter tengcongensis MB4, MB4, chromosome
Thermoanaerobacterium thermosaccharolyticum, pNB2
Thermobifida fusca YX, YX, chromosome
Thermosynechococcus elongatus BP-1, BP-1, chromosome
Thermotoga maritima MSB8, MSB8, chromosome
Thermotoga petrophila, RKU1, pRKU1
Thermus thermophilus, pTF62
Thermus thermophilus HB27, HB27, chromosome
Thermus thermophilus HB27, HB27, pTT27
Thermus thermophilus HB8, HB8, chromosome 1
Thermus thermophilus HB8, HB8, pTT27
Thermus thermophilus HB8, HB8, pTT8
Thermus thermophilus, HB8, pTT8
Thiobacillus denitrificans ATCC 25259, ATCC 25259, chromosome
Thiomicrospira crunogena XCL-2, XCL-2, chromosome
Thiomicrospira denitrificans ATCC 33889, ATCC 33889, chromosome
Treponema denticola ATCC 35405, ATCC 35405, chromosome
Treponema denticola, U9b, pTS1
Treponema pallidum subsp. pallidum str. Nichols, Nichols, chromosome
Tropheryma whipplei TW08/27, TW08/27, chromosome
Tropheryma whipplei str. Twist, twist, chromosome
Ureaplasma parvum serovar 3 str. ATCC 700970, ATCC 700970, chromosome
Vibrio cholerae O1 biovar eltor str. N16961, N16961, chromosome I
Vibrio cholerae O1 biovar eltor str. N16961, N16961, chromosome II
Vibrio cholerae, O395P, pTLC
Vibrio cholerae, SIO, pSIO1
Vibrio fischeri ES114, ES114, chromosome I
Vibrio fischeri ES114, ES114, chromosome II
Vibrio fischeri ES114, ES114, pES100
Vibrio parahaemolyticus RIMD 2210633, O3:K6, chromosome 1
Vibrio parahaemolyticus RIMD 2210633, O3:K6, chromosome 2
Vibrio parahaemolyticus, KXV237, pO3K6
Vibrio parahaemolyticus, ST566, pSA19
Vibrio salmonicida, LFI1238, pVS43
Vibrio salmonicida, LFI1238, pVS54
Vibrio sp. 41, 41, pPS41
Vibrio vulnificus CMCP6, CMCP6, chromosome I
Vibrio vulnificus CMCP6, CMCP6, chromosome II
Vibrio vulnificus YJ016, YJ016, chromosome I
Vibrio vulnificus YJ016, YJ016, chromosome II
Vibrio vulnificus YJ016, YJ016, pYJ016
Weissella cibaria, pKLCB
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis, chromosome
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis, pWb1
Wolbachia endosymbiont of Drosophila melanogaster, wMel, chromosome
Wolbachia endosymbiont strain TRS of Brugia malayi, chromosome
Wolinella succinogenes DSM 1740, DSMZ 1740, chromosome
Xanthomonas axonopodis pv. citri str. 306, 306, chromosome
Xanthomonas axonopodis pv. citri str. 306, 306, pXAC33
Xanthomonas axonopodis pv. citri str. 306, 306, pXAC64
Xanthomonas campestris pv. campestris str. 8004, 8004, chromosome
Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913, chromosome
Xanthomonas campestris pv. vesicatoria, pXV64
Xanthomonas campestris pv. vesicatoria, 85-10, chromosome
Xanthomonas campestris pv. vesicatoria, 85-10, pXCV183
Xanthomonas campestris pv. vesicatoria, 85-10, pXCV19
Xanthomonas campestris pv. vesicatoria, 85-10, pXCV38
Xanthomonas oryzae pv. oryzae KACC10331, KACC10331, chromosome
Xanthomonas oryzae pv. oryzae MAFF 311018, MAFF 311018, chromosome
Xanthomonas smithii subsp. citri, pXcB
Xylella fastidiosa 9a5c, chromosome
Xylella fastidiosa 9a5c, 9a5c, pXF1.3
Xylella fastidiosa 9a5c, 9a5c, pXF51
Xylella fastidiosa Temecula1, Temecula1, chromosome
Xylella fastidiosa Temecula1, Temecula1, pXFPD1.3
Xylella fastidiosa, ATTC 35868, pXF868
Yersinia enterocolitica, #29807, p29807
Yersinia enterocolitica, 8081, pYVe8081
Yersinia enterocolitica, A127/90, pYVa127/90
Yersinia enterocolitica, W22703, pYVe227
Yersinia pestis, pG8786
Yersinia pestis CO92, CO-92 Biovar Orientalis, pCD1
Yersinia pestis CO92, CO-92 Biovar Orientalis, pMT1
Yersinia pestis CO92, CO-92 Biovar Orientalis, pPCP1
Yersinia pestis CO92, CO92, chromosome
Yersinia pestis KIM, KIM, chromosome
Yersinia pestis KIM, KIM, pCD1
Yersinia pestis KIM, KIM, pMT1
Yersinia pestis KIM, KIM, pPCP1
Yersinia pestis KIM, KIM10+, pMT-1
Yersinia pestis KIM, KIM5, pCD1
Yersinia pestis biovar Medievalis str. 91001, 91001, chromosome
Yersinia pestis biovar Medievalis str. 91001, 91001, pCD1
Yersinia pestis biovar Medievalis str. 91001, 91001, pCRY
Yersinia pestis biovar Medievalis str. 91001, 91001, pMT1
Yersinia pestis biovar Medievalis str. 91001, 91001, pPCP1
Yersinia pestis, CH971662, pYC
Yersinia pseudotuberculosis IP 32953, IP 32953, chromosome
Yersinia pseudotuberculosis IP 32953, IP 32953, pYV
Yersinia pseudotuberculosis IP 32953, IP 32953, pYptb32953
Zygosaccharomyces bailii, pSB2
Zygosaccharomyces fermentati, pSM1
Zymomonas mobilis subsp. mobilis ZM4, ZM4; ATCC 31821, chromosome
Zymomonas mobilis, ATCC 10988, pZMO2
Zymomonas mobilis, ATCC10988, pZMO1
Zymomonas mobilis, ZM4, 1
haloarchaeal coccus LOC-1, GN101, pHGN1
plasmid pETHIS-1, pETHIS-1
uncultured bacterium, pB10
uncultured bacterium, pB4
uncultured bacterium, pIE1130
uncultured bacterium, pRSB101
uncultured bacterium, pTB11
uncultured bacterium, pTP6
uncultured eubacterium pIE1115, pIE1115
unidentified bacterium, pAA3.7X
Graphics
Table of all Genes
Table of putative alien Genes
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